Transactions 2006 Through Monday, June 12th
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| Team Name | Replaced | Picked Up |
| Priory of Yawkey Way | Released - John Garland | Ian Snell |
| Rooster Rage | Released - Eric Byrnes | Gary Matthews Jr. |
| Camel Jockeys | DL - Rich Harden | Sean Marshall |
| Non - Smokers | Released - Oliver Perez | Takashi Saito |
| The Bigg Doggs | Released - Joe Blanton | Francisco Cordero |
| Asian Pranksters | Released - Phil Nevin | Conor Jackson |
| Winged Buffalo | DL - Edwin Encarnacion | Reggie Sanders |
| Sultans of Swat | DL - Kerry Wood | Joel Zumaya |
| Priory of Yawkey Way | Released - Jason Marquis | No Open Spot |
| Rooster Rage | Released - Omar Vizquel | Activated - Brandon Phillips |
| Camel Jockeys | Released - Adam LaRoche | Dan Johnson |
| Non - Smokers | Released - Jose Castillo | Activated - Sean Casey |
| Non - Smokers | Reserved - Cliff Floyd | Matt Kemp |
| Make 7up Yours | Released - Marcus Thames | Activated - Jim Edmonds |
| The Bigg Doggs | Released - Chris Reitsma | No Open Spot |
| Asian Pranksters | Released - Ryan Freel | Activated - Jeff Kent |
| Sultans of Swat | DL - Mike Lieberthal | David Ross |
| A.C.L. | Released - Jason Michaels | Jason Lane |
| A.C.L. | DL - Juan Cruz | Casey Janssen |
| A.C.L. | Released - Eddie Guardado | Chan Ho Park |
| A.C.L. | Reserved - Joe Crede | Wilson Betemit |
| Harpooners | Reserved - Michael Barrett | Brian McCann |
| Sultans of Swat | Reserved - David Weathers | Activated - Chris Carpenter |
| Sultans of Swat | Released - Shawn Green | No Open Spot |
| Sultans of Swat | Reserved - Zach Duke | Logan Kensing |
| Non - Smokers | Reserved - Casey Blake | Mark DeRosa |
| Rooster Rage | Released - Ty Wigginton | Activated - Jay Gibbons |
| Rooster Rage | Released - Nate Robertson | Activated - Matt Cain |
| Winged Buffalo | Released - Jamie Moyer | Activated - Roy Oswalt |
| Winged Buffalo | Released - Luis Gonzalez | Activated - Rocco Baldelli |